rs46318390 SNP Detail

Summary

• ID
  rs46318390
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:167199868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGCGGTACT TTGAACTAGA GCCGAGGATG AATTTTTCCG
  TCCTCATCAC CATGACTTCA TCACCGATTC ACAGACTGTG TCGCGGGGGT GGGGGTGGGG
  Y
  GCGCTCACAG CTTTGCTCGT AATGGGTAGA AATGGCACCA TTATTTCACT AAGACTCTCA
  GAAAGAGATG CAGGCAGGAG CTTTAGGTAT GAGGCTGAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146037855	ENSMUSSNP5399325	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46318390					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:167199868 () rs orientation: forward

Symbol	Name	Function Class
Gm71125	predicted gene, 71125	1862 bp upstream
Mgst3	microsomal glutathione S-transferase 3	mRNA-UTR
Rr422700	regulatory region 422700	1607 bp distal
Rr422701	regulatory region 422701	1863 bp distal
Rr422702	regulatory region 422702	1718 bp proximal
Rr422703	regulatory region 422703	1873 bp proximal
Tssr14852	transcription start site region 14852	118 bp downstream
Tssr14853	transcription start site region 14853	1222 bp downstream