rs46318551 SNP Detail

Summary

• ID
  rs46318551
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:136497507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGTA ATGGGAATCT TGAGCCTCTG
  Y
  TGTCTTGTAC CAGGAATGAA GGCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60953379	NES16181918	PERLEGEN	MM_PANEL2	f	SNP		T	C		T	T		C	T	C		T
ss133840294	ENSMUSSNP2065526	ENSEMBL	ENSEMBL_Sanger	f	SNP	T			T
ss321996259	CHEV_6_136469030	CHEVERUD	SCREENING_POP	f	SNP							T				C
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46318551					SNP	T	T	C	T	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60953379	NES16181918	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136497507 () rs orientation: forward

Symbol	Name	Function Class
Atf7ip	activating transcription factor 7 interacting protein	within coordinates
Cpgi18104	CpG island 18104	1169 bp distal
Gm44140	predicted gene, 44140	1793 bp upstream
Rr133547	regulatory region 133547	1907 bp distal
Rr145858	regulatory region 145858	within coordinates
Rr145859	regulatory region 145859	693 bp proximal
Rr400014	regulatory region 400014	1640 bp downstream
Rr400015	regulatory region 400015	1243 bp downstream
Tssr59315	transcription start site region 59315	1699 bp downstream
Tssr59316	transcription start site region 59316	1658 bp downstream
Tssr59317	transcription start site region 59317	1634 bp downstream
Tssr59318	transcription start site region 59318	102 bp downstream
Tssr63804	transcription start site region 63804	1737 bp upstream
Tssr63805	transcription start site region 63805	1432 bp upstream