rs46319143 SNP Detail

Summary

• ID
  rs46319143
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141149554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAGC GGGAGCCCTG GAGGGCTGGC
  S
  CTGGGACTGA GGGGCGGCTG GCCCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147736029	ENSMUSSNP2308391	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs46319143					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141149554 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15227	CpG island 15227	403 bp distal
Gm70184	predicted gene, 70184	1184 bp upstream
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Rr100445	regulatory region 100445	within coordinates
Tssr40053	transcription start site region 40053	1445 bp downstream
Tssr40054	transcription start site region 40054	567 bp downstream
Tssr40055	transcription start site region 40055	554 bp downstream
Tssr40056	transcription start site region 40056	533 bp downstream
Tssr40057	transcription start site region 40057	472 bp downstream
Tssr40058	transcription start site region 40058	445 bp downstream
Tssr40059	transcription start site region 40059	421 bp downstream
Tssr40060	transcription start site region 40060	361 bp downstream
Tssr40061	transcription start site region 40061	351 bp downstream
Tssr40062	transcription start site region 40062	265 bp upstream
Tssr40063	transcription start site region 40063	1753 bp upstream
Tssr40064	transcription start site region 40064	1813 bp upstream
Tssr40065	transcription start site region 40065	1828 bp upstream
Tssr40066	transcription start site region 40066	1957 bp upstream
Tssr44314	transcription start site region 44314	380 bp downstream
Tssr44315	transcription start site region 44315	1791 bp downstream
Tssr44316	transcription start site region 44316	1874 bp downstream
Tssr44317	transcription start site region 44317	1932 bp downstream