rs46320444 SNP Detail

Summary

• ID
  rs46320444
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:74113269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGCT CTGAAGAACA GGCCTCTCTC
  M
  ATCTTTACTG CATACAGACT GCAAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60279630	NES15784907	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	A	C	C	C	C	C	A		C	C	C	C		C
ss145938519	ENSMUSSNP757381	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C						C
ss325449558	CHEV_17_74155614	CHEVERUD	SCREENING_POP	f	SNP												A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46320444					SNP	C	A	C	C	A	C	C	C	C	C	A	A	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60279630	NES15784907	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:74113269 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9490	CpG island 9490	771 bp distal
Ehd3	EH-domain containing 3	within coordinates
Tssr145810	transcription start site region 145810	1435 bp downstream
Tssr145811	transcription start site region 145811	1403 bp downstream
Tssr145812	transcription start site region 145812	1373 bp downstream
Tssr145813	transcription start site region 145813	1333 bp downstream
Tssr145814	transcription start site region 145814	1318 bp downstream