rs46323955 SNP Detail

Summary

• ID
  rs46323955
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116387015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCACTAGC TTTGCAACTT
  TTCTAAATGC TAGTTACAGT CTTTTATGTT TTATGCATTT AATTATAGGC ACTGGGAGAA
  AAGCAAGGGA AACAATGTTG GCAGGTCTGC CCCACAGATC CTATCAACCT GGATGCAACA
  GGATGGCCCA ATTATTAAAT CCAGAGGCCA GTGGTTAGGT GTGATTCTCA GCTCTTTCTA
  Y
  TAGCTGCTAA CTCTATAATC CTGACTGCTT CATGTAAATA ATAGTATAGA CTTTCTATAT
  TAAGTATAGA CTTACTATAT TATTAAGTAG AATAATAGTA TGACTTGCTT CCTAAGGTTT
  GTGAAAATTG AATTTTTAAA AGCAAAATAA CGTTTAGTAC TAGCCCTACA GCCAAAGCTG
  ACCAAGTATT TACTCTTAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss60436763	NES15940895	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T		C	C
ss320895789	CHEV_3_116296284	CHEVERUD	SCREENING_POP	f	SNP					T			C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs46323955					SNP	T	T	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60436763	NES15940895	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116387015 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13737	CpG island 13737	1110 bp proximal
Rr397965	regulatory region 397965	1397 bp upstream
Rr583746	regulatory region 583746	1084 bp proximal
Rr583747	regulatory region 583747	1381 bp proximal
Rr583748	regulatory region 583748	1462 bp proximal
Rr583749	regulatory region 583749	1655 bp proximal
Rr583750	regulatory region 583750	1823 bp proximal
Sass6	SAS-6 centriolar assembly protein	1616 bp upstream
Trmt13	tRNA methyltransferase 13	within coordinates
Tssr31360	transcription start site region 31360	1593 bp upstream
Tssr35316	transcription start site region 35316	1450 bp downstream
Tssr35317	transcription start site region 35317	1482 bp downstream