rs46324916 SNP Detail

Summary

• ID
  rs46324916
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:124715410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAA TCCACCTGCC TCTGCCTCCC
  A
  AGTGCTGGGA CTAAAGGCAT GCGCC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss149203461	ENSMUSSNP999222	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs46324916					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:124715410 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16619	CpG island 16619	1337 bp proximal
Eif2b1	eukaryotic translation initiation factor 2B, subunit alpha	within coordinates
Gtf2h3	general transcription factor IIH, polypeptide 3	1801 bp upstream
Rr399368	regulatory region 399368	1629 bp upstream
Rr620506	regulatory region 620506	1306 bp proximal
Rr620507	regulatory region 620507	1774 bp proximal
Rr620508	regulatory region 620508	1804 bp proximal
Tssr48907	transcription start site region 48907	1768 bp upstream
Tssr48908	transcription start site region 48908	1787 bp upstream
Tssr53375	transcription start site region 53375	1676 bp downstream
Tssr53376	transcription start site region 53376	1698 bp downstream
Tssr53377	transcription start site region 53377	1736 bp downstream