rs46326536 SNP Detail

Summary

• ID
  rs46326536
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:106107218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGGCTTCCT TGCAGTCTCT CTGGTCTTCA TCAATAATGA
  ATCCTAGCTC TCGAGCTGTC TGTGAACAGT CCTCTAAACT GAGAACAGTG TTAGAGAACA
  T
  TAGAAAATGT TTGATGGCAT TGGTGAGCTC CTCTGTTAAT TCTGCCTCAT TTCTATTCTT
  GATGCCAATT CTCATTCTTT TACCAGAAGT ATTTGCTAT                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145614936	ENSMUSSNP3520939	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46326536					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:106107218 () rs orientation: forward

Symbol	Name	Function Class
Gm72977	predicted gene, 72977	within coordinates
Gvin-ps7	GTPase, very large interferon inducible, pseudogene 7	within coordinates
Tssr74133	transcription start site region 74133	1963 bp upstream
Tssr74134	transcription start site region 74134	1708 bp upstream
Tssr74135	transcription start site region 74135	1628 bp upstream
Tssr74136	transcription start site region 74136	1582 bp upstream
Tssr74137	transcription start site region 74137	1516 bp upstream
Tssr74138	transcription start site region 74138	1478 bp upstream
Tssr74139	transcription start site region 74139	1436 bp upstream
Tssr74140	transcription start site region 74140	1383 bp upstream
Tssr74141	transcription start site region 74141	993 bp upstream
Tssr74142	transcription start site region 74142	839 bp upstream
Tssr74143	transcription start site region 74143	1200 bp downstream
Tssr74144	transcription start site region 74144	1390 bp downstream
Tssr74145	transcription start site region 74145	1495 bp downstream