rs46329119 SNP Detail

Summary

• ID
  rs46329119
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:149709634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTGCACA GCCCACATAT
  GCCAAGATTG AAGCCTTTGG CATATTTGGG AGATTGTTCA CCGTGTCGCC AGGCATGACA
  CTTTTGTTAG CAGTCTAATT ATTCCATCTG GCTAAGACAC ATTGCTACAC ACTATAAAGG
  AAGAATGCCT CATCTACTTA TGTACTTCTC ATTTGTTAAT AGACACACAC TAGAGACAAA
  Y
  TTGCCATTTA TGTTATATAC CAGTAAGCTT CTACCACCAC AGGCAACCTG AATGTCCATT
  CCACAAACTA GGGCCAGAAA AACCTCTGCC TACTGTGGGA AGAAGCTGGA CACAATTAAA
  AGCAGTATCT CTATTAGCTC TATTAGCTTT AGATGGAAAA TCTTGGAGCT GTTCCCCCCA
  AGAAACTCCT GTACCCATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63331611	NES17509244	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46329119					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63331611	NES17509244	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:149709634 () rs orientation: forward

Symbol	Name	Function Class
Gm18167	predicted gene, 18167	within coordinates
Syndig1	synapse differentiation inducing 1	within coordinates