rs46329746 SNP Detail

Summary

• ID
  rs46329746
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:44235721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTCTTCGA GGAGCCGTAG
  AGATGAGTGT TTACTCACTC TCTAAGATGA GGAACTGGAG GCGCATTCAG CTAGATTCTA
  AGCTAGTAAA TGTTGATGGC CGACGTCTGA AGGAGAGTTT GCTGTTGTGG TGTGAAAGAG
  TGGGATCCTG ATTAGAACTG GGAGGTCTTC TAGGACTTTA TAGAGCAGAG GTTTGCAGCC
  Y
  GTGACACTCA GCTCATGGAG ACCTAGGTGG CCTTGGGTTC TGAGCACCAG ACAGGACTTG
  GAATATGTCT CAGTCATCCG TCAGCCTTCA CTGCATTGCC AACCCAGCCT CCTCAGGAAA
  TGTGAAGAGA GGGTGTGTTG TCTTCTCTTG ACGTGTGCAG CATGTCTGAG AATGCATGTC
  ACTGAGGTTC ATTGAGAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52251153	NES15310126	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46329746					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52251153	NES15310126	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:44235721 () rs orientation: forward

Symbol	Name	Function Class
Atg5	autophagy related 5	Intron
Mir1929	microRNA 1929	within coordinates
Rr430947	regulatory region 430947	1999 bp distal
Tssr93169	transcription start site region 93169	1327 bp downstream