rs46329832 SNP Detail

Summary

• ID
  rs46329832
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:103122725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGACAGCT CAAACACACT
  AAGTCTCCTT TTTAGCAATC TCATTTGGGG GCTAGAAGGG AAGAAGGACA GAGAAAAAAA
  AATTCAGAAA TTAGTCACTG GACTAGTCTG TAATTCCCAG GCAGGGCTCA ACTAACCTAA
  ATAGTTCAGG AGGTGCCCTG TCTCTTAACT GAAGTTGACT TTGGGCCAAA GGACGAGGAG
  R
  GAAAAGAAGT CTGGCTCCAG ACTCTGCATC AACACTAAGC CTCCTCAGAA CACAGAGGAC
  TTATTCATCA GCCCCAGGCC CCAAGAAAGC CACACCAAGG CAGCACAAAT GGAAACTGAG
  TTAAGCTCAG AAATATGTAC GTCAGGAGTG CTAACAGAGA ACCTAGTTTT AAAAATTCCC
  ACACTATTGT TACCATAATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63632003	NES17049813	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46329832					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63632003	NES17049813	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:103122725 () rs orientation: forward

Symbol	Name	Function Class
Cbx5	chromobox 5	Intron
Rr391239	regulatory region 391239	215 bp upstream
Rr510552	regulatory region 510552	within coordinates
Rr510553	regulatory region 510553	578 bp proximal
Rr510554	regulatory region 510554	997 bp proximal
Tssr136729	transcription start site region 136729	1046 bp upstream
Tssr136730	transcription start site region 136730	820 bp downstream
Tssr136731	transcription start site region 136731	987 bp downstream
Tssr136732	transcription start site region 136732	1963 bp downstream