rs46335502 SNP Detail

Summary

• ID
  rs46335502
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:40547084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCATGTG CCCGCTTGGC
  ACTTCAGCCG AAATTGAATT CTGGAAAAGA TTGCAGTGGC TTCCAAACAA TCTCTAGTAT
  TGTCCTCCAA ACTTAGCAAG CATGTAATCT AATATACTAA ATATACACAC ATGAGGCTCC
  CTTAAAACGT CATCAGTGCA GCTAGAGGTT GGGGGCGGAG CCTTTGATGT ACAGCGGCAC
  K
  CATGGCTCCG AAGCTGTTGG TATATTCTTT GTGCTTGTTG GAAACCTGGA TTACTCAGAA
  ATAAATATGC TATATCATTA TCTAATAGTT GGGCAATGAC CACAGCATTT TGTTAAATCC
  TTATGGATTT ATGGCAGGAC ACTCTACAGT GAAGGGAACC GATTCAGTCT TGGGTGCTAA
  GGGTAAGTCT TTGTTTACAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61273181	NES16894031	PERLEGEN	MM_PANEL2	f	SNP	G	T	T	T	G	T	G	T	T	T	G	T	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46335502					SNP	G	T	T	T	G	T	G	T	T	T	G	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61273181	NES16894031	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:40547084 () rs orientation: forward

Symbol	Name	Function Class
Ddo	D-aspartate oxidase	within coordinates
Tssr93028	transcription start site region 93028	1981 bp upstream