rs46335985 SNP Detail

Summary

• ID
  rs46335985
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:40962863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCT GGGGCTTCCT GGCCAGTCAA
  C
  GTAGCTTAAT CAGGAAGTCT CAGGC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144660197	ENSMUSSNP4668414	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss322631343	CHEV_8_41595176	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46335985					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:40962863 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cnot7	CCR4-NOT transcription complex, subunit 7			Intron
				Noncoding-Transcript-Variant
Cpgi20281	CpG island 20281			1014 bp proximal
Rr662586	regulatory region 662586			897 bp proximal
Rr662587	regulatory region 662587			1472 bp proximal
Tssr2553	transcription start site region 2553			1394 bp downstream
Tssr2554	transcription start site region 2554			1655 bp upstream
Tssr76955	transcription start site region 76955			1594 bp upstream
Tssr76956	transcription start site region 76956			1947 bp upstream
Tssr76957	transcription start site region 76957			1967 bp upstream
Tssr81046	transcription start site region 81046			654 bp downstream
Tssr81047	transcription start site region 81047			1436 bp downstream
Tssr81048	transcription start site region 81048			1455 bp downstream
Tssr81049	transcription start site region 81049			1476 bp downstream
Tssr81050	transcription start site region 81050			1841 bp downstream
Vps37a	vacuolar protein sorting 37A			1961 bp upstream