rs46336100 SNP Detail

Summary

• ID
  rs46336100
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79896027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTAAATG TGGAAGAACC
  ACAAGCAGCT ATTTTGTCCC AAACATAAAC ATATTTGGGT TGGCCATAGG ATTCCAGGAA
  AAGTGGAGCA GAAAAGGTGG AACCCGCCCC AATATGGGAG GACTACAAAT CCCATAATGC
  GTTGGAAAAA TACGTCTCGG CCGTTCACGT ACACTCGGAC CTCTAGACGC ACCCGGCAAA
  Y
  GCAGACAGCT AGGGGGCCAA GATGGCTTCT ACTGGCGCCA AAGTGGGTGT GGTTCCCGGG
  AAAGCCACGC CCCCAGAACG CTACTGCAAT AGGGGCGGCC TTCGTGTCCA TAGCGACGGC
  GGCGGCGGCG GCCGTCTGCT TGCTTAAGAA GTCGCCGCCG CCGCCAGGAT CTCGGAGCCA
  GGAGTTAACC CCGAGGGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61024258	NES16111181	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46336100					SNP	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61024258	NES16111181	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79896027 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19326	CpG island 19326	within coordinates
Gm73873	predicted gene, 73873	within coordinates
Rr165873	regulatory region 165873	1031 bp distal
Rr168083	regulatory region 168083	within coordinates
Rr400401	regulatory region 400401	within coordinates
Tssr2310	transcription start site region 2310	80 bp upstream
Tssr67422	transcription start site region 67422	90 bp upstream
Tssr67423	transcription start site region 67423	96 bp upstream
Tssr67424	transcription start site region 67424	151 bp upstream
Tssr67425	transcription start site region 67425	168 bp upstream
Tssr67426	transcription start site region 67426	227 bp upstream
Tssr67427	transcription start site region 67427	250 bp upstream
Ttll13	tubulin tyrosine ligase-like family, member 13	97 bp upstream