rs46336710 SNP Detail

Summary

• ID
  rs46336710
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127685617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGAGTTC AAATATACAC
  TTGAGGGAGA AGCTGTTAAA TGGCTTCCTT ACATACATCT ATTACTGATC TATTAGTACT
  ATCCTAAAGG GCCATTATAG TGAATGATAT GGGTTAGTGC ACTTGTATTC CCTCTATTTC
  TCTGCCAAAC CGTGGTCTGT GGTCATAGCA CTGCACCACG TGAGACTCTG GTAAGAGATG
  Y
  CAAGGGTCAG ACCCTTACTG AAAATTAGCT ACATCAAAAT CTTTGTTAGC CAGAGATGAC
  AGGTCATGCA CGTTAGCTGA GAGTGCTGCC ACAGCCGCCC TCCGCCTGGT CTCTCGGTTA
  ACTGTGGGTG TGAAAAACCT TAAAGACTAC TTGTCACATT TCTTCTCAGT TCCGGTTTGA
  CAAAGTGGCT CCCGCAGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135874370	ENSMUSSNP2825625	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320957951	CHEV_3_127594886	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46336710					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127685617 () rs orientation: forward

Symbol	Name	Function Class
Fam241a	family with sequence similarity 241, member A	Intron
Rr584893	regulatory region 584893	1647 bp distal
Rr584894	regulatory region 584894	255 bp distal
Rr584895	regulatory region 584895	1372 bp proximal