rs46337245 SNP Detail

Summary

• ID
  rs46337245
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156055314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTCA GCCATTCTCC CGGTGTCTGG
  Y
  TCTGTAACAC AGGCCTGGCC TCTGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60330237	NES15828259	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C	T	C	T	T	T	C	C	T	C
ss145791078	ENSMUSSNP5859938	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46337245					SNP	C	T	T	T	C	T	C	T	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60330237	NES15828259	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156055314 () rs orientation: forward

Symbol	Name	Function Class
Gm38113	predicted gene, 38113	451 bp upstream
Rr421145	regulatory region 421145	508 bp distal
Rr421146	regulatory region 421146	1589 bp proximal
Rr421147	regulatory region 421147	1727 bp proximal
Rr421148	regulatory region 421148	1875 bp proximal
Rr421149	regulatory region 421149	1995 bp proximal