rs46338401 SNP Detail

Summary

• ID
  rs46338401
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18996534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCACTGGGC TGTTTTCCCT
  ACAGAAAGCA GAGCAGTCAC CTAGGACACC GCGAGGTGGG TGGGGACATG GCTCAGTGGT
  AGAGCACCTG AGTGGCTTGT CCAAAGCCAC CCCCCCATTC AACCACCAGC ACCTCTTAAA
  AAAAAAAAAA AAAAAAAGGC AGGATTTTGG CATCATTAGG GAATTTAAAA TAAAAGAAGA
  C
  TTGTTCCCTG CACTAGAGTT TCCACTTGAC CCAGATCACC ACATGGGCTG AATGTTTCCA
  AAAACAGTAA GAAATACCAT GTAGCTGGGC ATAGGGCACA CGCCTTTAAT CCCAGGACTC
  AGGAGGCAGA GGCAGGCAGA TCTCTGAGTT CAAGGCCAGC CTGGCCTAAG GTGAGTTTCA
  GGACAGCCAA GGCTACCCAG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148471667	ENSMUSSNP2690815	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss322116773	CHEV_7_19847958	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs46338401					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18996534 () rs orientation: forward

Symbol	Name	Function Class
Tssr70879	transcription start site region 70879	1907 bp upstream
Tssr70880	transcription start site region 70880	1666 bp upstream
Tssr70881	transcription start site region 70881	1602 bp upstream
Tssr70882	transcription start site region 70882	550 bp upstream
Tssr70883	transcription start site region 70883	1860 bp downstream
Vasp	vasodilator-stimulated phosphoprotein	within coordinates