rs46338545 SNP Detail

Summary

• ID
  rs46338545
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:5772989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAATGGGC TTCCCCCCTC
  TATTATAAAG CGTGTCCACC ATTAAAAATT TGAGCCTTGA TCAGAATTCT GTCTTGGTTC
  CATCTCTCTC TCGTCGCCTA GTTTCCCTCT TCTTTTTCAG CTCCAGGCTG CCTCCCAGGC
  TCGAACCCGG ACATGAGAGC TGCAGGCCAG CCCCAACACT TCAGGAAAAG AAAGAAGCTA
  R
  ACCCCTCCCC AGGTCATGTC TACCTTCCTG CCAACTACCA TTCTCACTCC ACTGCAACTT
  TCCTGGTTGA ATTTCTCTTC ATCAATAAGA CTTTCGAAAA GCAAAATAGA GAGATGCTCA
  AATGGAGGTA AATGATTATT GATGTCCTTT CAATTTTTTA AATGAGGAAT TAATTTTGAG
  AAATGTTTGC TTTCTGAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324223054	CHEV_13_5722236	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs46338545					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:5772989 () rs orientation: forward

Symbol	Name	Function Class
Gm35330	predicted gene, 35330	within coordinates
Rr387902	regulatory region 387902	861 bp upstream
Rr474521	regulatory region 474521	498 bp proximal
Rr474522	regulatory region 474522	1432 bp proximal
Tssr121308	transcription start site region 121308	1449 bp downstream