rs46338571 SNP Detail

Summary

• ID
  rs46338571
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:5536589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACGCTAGTT ACAACACTGG
  CTTTACTGTC TTCTCTTAGG TTGGGAAAAG CACAGGGATT CTTCTTTTTC ATTTTTCTGT
  AAAGGAAAGA GGACAAATAG CTACAAAGTA TCCTATGCAG ATCACAGTGG ATATGCAAGA
  CATTCTTAGT AATAACTGAT ATCCTCACGA CTATGAGCCT ATCTACTCCT AAGCAAGGTA
  Y
  AGCTTCCTGT GTTTAAGTCT TTCAGATACT TTATGATTTT CCTCATAGGC CATCTTGTGA
  TGCCTTATTT AGTGACTGAC ATCATATTTT CCTTCCTATT TCATGATCCT CTGCCCAGTT
  TTCTATTCAA TCACATTTTC AAACTGGTTT TGTTTAATGT ACAAGCTTTG TATGAAACTT
  TGGCAACAAC CAAATTTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss145954782	ENSMUSSNP250339	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs46338571					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:5536589 () rs orientation: forward

Symbol	Name	Function Class
Tssr36375	transcription start site region 36375	232 bp upstream