rs46338576 SNP Detail

Summary

• ID
  rs46338576
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:141153853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCCATTAT ATCAAATAAC
  TTAATGTTCA CACGTAATAT AATCTAGACA TATCCTCCTG CAAATGCTCC TTCATCACCA
  GAAAGCTTAC AATGACCAGT AATACACAAG TGCTATATAA ATAGCTGTTG TGTTATTGCT
  TAGGGGATGA TGAAACACAA CAGGTTGTGA TGCTTTTTCC CTAAATGTTT AGCATCTGTA
  S
  TTGTTTGTAC AGATGTAGAG CCAGATATAC ACAGTGCAAC ATTGTACTAT CTGTAGTGGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GCTTGTGTGT GATCTACTTC
  AAAATTACCT GAAAATCCTG AAGGGCTAGT AACAGAATAT TTATCTAAAA TCTAAAAGAA
  AGAACACCTT CATATCTTCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136004442	ENSMUSSNP1613842	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	C
ss320992221	CHEV_3_141111056	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46338576					SNP	G	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141153853 () rs orientation: forward

Symbol	Name	Function Class
Gm66152	predicted gene, 66152	within coordinates
Tssr32030	transcription start site region 32030	1103 bp upstream