rs46338791 SNP Detail

Summary

• ID
  rs46338791
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:113665012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAATGAAGT ATTTAAAAAC TCTTCAGAGA GGGCCAAATC
  TTCTGTAACT CAAATAACAA AGCAATATGT TCTTTACTGT GGAAAATATG TAATAAATCC
  W
  TAATCCATGA TTTAAATGAA TTATTCCCTG GCTTCCACAG GAAAGAGGTT CCTTAGTGGC
  AAAAGTAGCA GCCCACCAAA TGACTCACAA TCATGTCATG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62041313	NES17144722	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46338791					SNP	T	T	T	T	A	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62041313	NES17144722	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:113665012 () rs orientation: forward

Symbol	Name	Function Class
Gm34471	predicted gene, 34471	within coordinates
Gm34528	predicted gene, 34528	1277 bp upstream
Gm53817	predicted gene, 53817	within coordinates
Rr278332	regulatory region 278332	1659 bp proximal
Rr282402	regulatory region 282402	613 bp distal
Rr389105	regulatory region 389105	756 bp upstream