rs46339029 SNP Detail

Summary

• ID
  rs46339029
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:138115524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTAGCGAC TGTGGTTCTG
  GTTCGGGGAG TTCCTCCATG GTGGTTCTGG GAGATTGAGG AGGAGCGCCC CGCCCAGCCG
  TCGTCGGCGC CCGCTCTAAG GAAAGGCTTT TCCACCCCCG AGGGCTCCCT GGAACAAAAC
  CCTGATTCTT TTGCTTCCGG AATCGCATTT CTAGTCTCTC CGTTATTGTC TGTTACCTGA
  Y
  GGAAACTGCC CTCTTTCTTC CCCAGCAAGA GCCCTGAGAT CTAAACTCAG AACTAATTGT
  TAAGAATAAG CCCAAGTGTA GAAACCTCTG AAAACCCGAA TCTCCTCAGT CTTGAGTCTT
  GTCCAGTCCA GGCGGGGAAT TGGTCCCGGT GGGCTTTGTG CGCACTGGAC AAGGATTTGC
  TCAAGTCTGG AAAGATTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60847513	NES16003365	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46339029					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60847513	NES16003365	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:138115524 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16853	CpG island 16853	within coordinates
Gm71396	predicted gene, 71396	1992 bp downstream
Rr399441	regulatory region 399441	137 bp downstream
Rr623030	regulatory region 623030	211 bp distal
Rr623031	regulatory region 623031	within coordinates
Rr623032	regulatory region 623032	1135 bp proximal
Tssr49413	transcription start site region 49413	276 bp downstream
Tssr54072	transcription start site region 54072	394 bp upstream
Zscan21	zinc finger and SCAN domain containing 21	within coordinates