rs46339511 SNP Detail

Summary

• ID
  rs46339511
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88187149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACGTGTCC AGGTTCAGGG
  GGGATCTTGA AGCCACATAG TTAATCCTGG GTTTGGATGG GGGAGTCAAA GCAGCTGAGG
  TGGGAGGAGG GCGAGCCCTA GTCTAGCTTG CAACACTAGG TCTGCCAGTC CTGTTTCATG
  CTCCCCTGAT CTTGCACACT GCCAACTTCA GCCAGATAAG ACACTTGACT GATGTCTTCA
  C
  AGGTCAATGT GTGCCTGCCT CTCTTTCTGG GAGGCAGCCA GCCCTGTGGG CCTGGCGACC
  CCTCACTGGA GTTAAGGCAT GACTGTACAT CTATCATTTC AGGAATTATT ATGAAGCAGC
  TGTCTGCCCA TTATCTGAAA AAGATGGACC TTGTGGGACT TCGCAATTGT TAAGTAGCGT
  GGACTCAGTG GTAGAAATGG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss144898855	ENSMUSSNP5983944	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs46339511					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88187149 () rs orientation: forward

Symbol	Name	Function Class
Mroh2a	maestro heat-like repeat family member 2A	within coordinates
Rr18061	regulatory region 18061	149 bp distal
Rr35066	regulatory region 35066	within coordinates
Tssr7958	transcription start site region 7958	302 bp downstream
Tssr7959	transcription start site region 7959	282 bp downstream
Tssr7960	transcription start site region 7960	259 bp downstream
Tssr7961	transcription start site region 7961	230 bp downstream
Tssr7962	transcription start site region 7962	70 bp downstream
Tssr7963	transcription start site region 7963	40 bp downstream
Tssr7964	transcription start site region 7964	13 bp downstream
Tssr7965	transcription start site region 7965	within coordinates