rs46340111 SNP Detail

Summary

• ID
  rs46340111
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:13438255 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTTAATC ACTACGTCAA
  ACCTCAAGTC CAGTTACACA GCACGGAGGG TTTAAGTAGT GCTCTCTAGC GTAGTATTTA
  CACTACAGTT TAAGTGATTA GTATTAGTGG TTGAGATGTT TGGTTCAGGC TGGGTGCCCA
  TTCTCTTGGA AATGTATGTC CTTAGTCGTG CTTTTATTTG TCCCAAGTAA TGAACACTGT
  R
  TGGAGTCCCC GTATGTCGTT GTAACTGTGT ATGTCCCCGT ATGACGTTGT AACTCCCCAC
  TGTGGAGACA CATAACCCAC ATCCAGTCAT GGCTGACGCT CACTTCACGT TCCTCCCTTC
  ATCAGTGCAT CCCTGGGTAC CGAGCTGAGG AGGCTGTGGA GCTCCTAAAG ACCTTCTACA
  AACAGGAGAA CCCAAATGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss52145413	NES15236882	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs46340111					SNP	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52145413	NES15236882	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13438255 () rs orientation: forward

Symbol	Name	Function Class
Adat2	adenosine deaminase, tRNA-specific 2	Intron
Gm66583	predicted gene, 66583	377 bp upstream
Rr427807	regulatory region 427807	1724 bp proximal