rs46340205 SNP Detail

Summary

• ID
  rs46340205
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52648783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTGTGCG CCACCACCGC
  CCGGCTCTGC GTGACTTCAT AACCCTTCTT TTTCTGCATA TCAGAAAACC GGTGCCAATT
  AAACAAGTTT TAAAATTATT TTCTCATGCC AAGTTGGAGG AAAGATGGGA GGACGAGGAG
  AAGGGAAAAA AAAAAAAAAG AAACTCTAGT TAAATTAAGT AGTAACTTGC CTTGTCCTTC
  R
  GTAGTTCGTT TGTTAATGAA TTGAGACAGT TTGTATAGGT GTTGTACAGG ACTATCTTCT
  GAAACAAACA AAATCTATCT TACCACATTC TGTAATGTCT ACTGGCAAAA GATCATCTCA
  GCTGGGCTTG TTGACCCACA CCTGCTCATA AAGGGGCAGG GAGGTCAGGC GACCCTTACC
  TGAGTATCCA CCCTACCTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52424051	NES15399318	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46340205					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52424051	NES15399318	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52648783 () rs orientation: forward

Symbol	Name	Function Class
1700031P21Rik	RIKEN cDNA 1700031P21 gene	within coordinates
Cpgi4596	CpG island 4596	974 bp proximal
Gm24859	predicted gene, 24859	1788 bp upstream
Rr387217	regulatory region 387217	1474 bp downstream
Rr403283	regulatory region 403283	1653 bp upstream
Rr466025	regulatory region 466025	45 bp proximal
Rr466026	regulatory region 466026	308 bp proximal
Tssr116285	transcription start site region 116285	311 bp downstream
Tssr116286	transcription start site region 116286	363 bp downstream