rs46341161 SNP Detail

Summary

• ID
  rs46341161
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:29982034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTACC GTGGACACAG GTGTGAAAGA
  Y
  TAAGGCAGAC TTATGACGGA CCGTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss148672400	ENSMUSSNP4577308	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs46341161					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29982034 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700020L13Rik	RIKEN cDNA 1700020L13 gene			Intron
				Noncoding-Transcript-Variant
Cpgi18786	CpG island 18786			1589 bp distal
Rr644767	regulatory region 644767			1712 bp distal
Rr644768	regulatory region 644768			1187 bp distal
Rr644769	regulatory region 644769			743 bp distal
Rr644770	regulatory region 644770			352 bp distal