rs46341366 SNP Detail

Summary

• ID
  rs46341366
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:32112439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCCACAC ATAAGGAAAA
  TATGTGACTC ACGAAACCCA AAACCTAGAA ATCAAAAATA TCATTTCGTT TTATTTTTTA
  AAAATTGCTT CTTACCCATT TGTTTACAAT GTTTATTTAT CTTTTTTTTT CATAAGGGAA
  TTCATTTCTC AAGTTCAGTT TCTTAACCTC ATAATAATAA TACTGGTGTG TGTTTTTTTT
  W
  AAATAACATA CTTCTAAATT GTAATTGTGT GGTGTATAAG AAATAAACTC AGAAAAATGT
  GGTCTTCACA TGAGGCCATA TGGAACACAG TATTAGTCAA GTTCTCTACC GAAATGTTTT
  GCAGATCCAA TAATCTAAGA TGTATTTCTA TCATGTTTCT CCCTACTGCT CAGCAGAAAA
  TGCAAAGAAT ACTAGTTAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss137572536	ENSMUSSNP1318210	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46341366					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:32112439 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4539	CpG island 4539	832 bp distal
Gm51992	predicted gene, 51992	within coordinates
Gm60244	predicted gene, 60244	281 bp upstream
Prkar2b	protein kinase, cAMP dependent regulatory, type II beta	1144 bp upstream
Tssr116073	transcription start site region 116073	1489 bp upstream
Tssr116074	transcription start site region 116074	1232 bp upstream
Tssr116075	transcription start site region 116075	1139 bp upstream
Tssr116076	transcription start site region 116076	1123 bp upstream