rs46341369 SNP Detail

Summary

• ID
  rs46341369
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:8822276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGGGCTG TTTTCTGTTT
  GATTGTTTGC TTTTAAGTTT TTGGGTTTTT TTTTTTTTTT TAAAATGGGT AATGGATAAA
  GCCCGAGGCT AGGCAGATAG CAACTTTCAG TACTATTACA TTACTGATTC TCATTTATTT
  TCAAATGTTA GTAGCTATGC TGGATGCTTG GCATTATCCA TTATCATTAA GTAGGGGTGT
  R
  TGTGTGTGTG TGTGTATTCT CTTTTGATGA TTTTTTTAGT AAGACATAAA TTAGATGATT
  TCTTTCTAAA TGTTTTAAGA GTATTCCTTT CCTGTTCCAG CTCCTATCTT CATTGTCAGT
  GGGCGTCAGT AGAAGATCTG GAAAAAGACA AGAGAATTCA GCAAAAGATA AAACGGTTTA
  AGTCAAAACA GGGCCAGAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss145983627	ENSMUSSNP6996236	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs46341369					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:8822276 () rs orientation: forward

Symbol	Name	Function Class
Chd7	chromodomain helicase DNA binding protein 7	within coordinates
Tssr1116	transcription start site region 1116	137 bp downstream
Tssr36434	transcription start site region 36434	496 bp downstream
Tssr36435	transcription start site region 36435	474 bp downstream
Tssr36436	transcription start site region 36436	506 bp upstream
Tssr36437	transcription start site region 36437	533 bp upstream
Tssr40890	transcription start site region 40890	351 bp downstream
Tssr40891	transcription start site region 40891	965 bp downstream