rs46341564 SNP Detail

Summary

• ID
  rs46341564
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:138085820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTAGGGCC TTATATATGC
  TAGGCAAGTA CACTGCAACT GAGCTATGCC ACCCAACCCT TAAGTTCATT TTTAAAAAAT
  AAGCCTTCCC CAGTGTCTAC CAAGTGCCAG AAACTTTTTT TCAGAATTTC ATAAGCTAAT
  TTGCTTAATT TAAGAAACAT TGAACACACA CACACAAATG TAGTAACTTG GTAAATTCAA
  Y
  CAAGTGTTGT TTGACTCAAG CCAGGGCCTT AGACTTCATG CACTTTGCCA CTGAACATCA
  TCCCTGGCCT TTTTTGCATT TTTTTATTTG TTTTGTTGAT GTTTGGGGGT TTTGTTGTTG
  GTTGTTTTGA TTTGGTCTTG GCTTTTAAGA TGTCTTTTTA TAGCTCAGGA TGGCAGTGAG
  CTTCTTGTCT TCCTGCTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60847611	NES16003859	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46341564					SNP	T	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60847611	NES16003859	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:138085820 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16852	CpG island 16852	1884 bp distal
Gm57302	predicted gene, 57302	1729 bp upstream
Rr124606	regulatory region 124606	419 bp distal
Tssr49410	transcription start site region 49410	1725 bp upstream
Zkscan1	zinc finger with KRAB and SCAN domains 1	within coordinates