rs46342096 SNP Detail

Summary

• ID
  rs46342096
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127317332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTTTGTT CCTCTTCCTC
  CCTATAGAGG GAGATGTCAC TTCCTCAAGG AGAACTAACT GCCCTTGGGT GTACACAGTA
  GACCTCAAGT GGGCATTTAG GGGATGTTGG CGGAGCTCCT TAGTGATTGT GTGCTCAGCA
  CAGAATACAC CCTGGGAAGG CTGTGCTTGA ACTCACGTTT AGACCTTGCC CCTGAGAGCC
  Y
  CGAGATAACT CACAGTTGCA GAGTTTAAGT GGCAAATGGG GCAGGGGGTA TACTGGGTCT
  CTTTTGAGAG AGATGTGGAA GTCACAAGCT ATCCCGGGCT TGGCGGGCAG CCTGCTCAAC
  GGCCACGTGA TTCATAAGTA TGTCTTGTAT GACTAATGTG TTCCTCCCTT CCCTCCGCCT
  CCCTTTATGC TTTTCTCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61334486	NES16949968	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46342096					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61334486	NES16949968	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127317332 () rs orientation: forward

Symbol	Name	Function Class
R3hdm2	R3H domain containing 2	within coordinates
Rr213569	regulatory region 213569	1732 bp distal
Rr213570	regulatory region 213570	within coordinates
Rr218482	regulatory region 218482	within coordinates
Rr221959	regulatory region 221959	1958 bp distal
Tssr96215	transcription start site region 96215	184 bp upstream
Tssr96216	transcription start site region 96216	227 bp upstream