rs46343355 SNP Detail

Summary

• ID
  rs46343355
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:54945610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTACCCA TCTTCTCTTC
  CCTGAGCGGA TATGTAGGTC ACCAACCAGC AAGTGGATCA AATCTCCTAG GTAGAGACCT
  TCGACCTTGG GAACGTTTAG AGCAGATACA GGTGCTGCAA GATGGAGCGG ACATTGAAGA
  ACGCCACCGA TGCTAAGGAA AGAGCCCCTG CCCACATGCA GTTCTCATGT GCATTTTGTG
  M
  AGTCAGCAAT TCTGTTTTCT CCACAGCCTT CAAAATGTCA GCTTCTCATG TCAAGCAGTA
  TGAGTACGTC AGGCGAAGCG GAGGCTTTCT TATGGTTTCA GGCTGGTAGT ATTTCAGAAC
  CACATGATTG CAGGGCTGAG CTCAGCAGGG CTGTACTGGA GAGCAGATTG CATATCCCTC
  ATGCTGCCCA CATTTCAGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60735309	NES16377610	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46343355					SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60735309	NES16377610	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:54945610 () rs orientation: forward

Symbol	Name	Function Class
Ankrd44	ankyrin repeat domain 44	within coordinates
Rr1418	regulatory region 1418	within coordinates
Rr411098	regulatory region 411098	493 bp distal
Rr411099	regulatory region 411099	within coordinates
Tssr11696	transcription start site region 11696	713 bp downstream