rs46343407 SNP Detail

Summary

• ID
  rs46343407
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122968799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAATGTTC ATACTATTAG
  TAAATTATGT ATCCTAGACA AAATGGGAAA AAAGAAGTGT GGAAAAGAAG AAACAAGGAT
  GGACTTATTT CTCATGAAAT GAATGTGCTT CTCCTTCTAG CTCCCAGAGA GAAACCTATC
  CGTGATCTAA GAAAGCCTGG TTCCCCCTCA CTGCTTCTTA CATCCCTGAT GCTACTTCTC
  Y
  TGCTGCTGGC AATCACATTC TTAGTTGCTT TTATCAGTAA GTATCCTGCA CACATCAATG
  GGCCTTGTCT GCCTTAGATG AAGACAGGTT CCACTCTAGC AGTTGGCATT TAATGGAAAT
  ATGAAGAAGA AATATTCTTT GGTGAAAATT AAAATCACAT TCATGAGTGT CTGTGTGGGA
  CTGTCTTTAT TAGGCTAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60937731	NES16191455	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46343407					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60937731	NES16191455	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122968799 () rs orientation: forward

Symbol	Name	Function Class
Clec4a4	C-type lectin domain family 4, member a4	within coordinates
D6Mit300	DNA segment, Chr 6, Massachusetts Institute of Technology 300	384 bp distal
Tssr58744	transcription start site region 58744	1532 bp downstream
Tssr58745	transcription start site region 58745	1475 bp downstream