rs46343490 SNP Detail

Summary

• ID
  rs46343490
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:103912766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCTCTTC CTCTCCCCCC
  TCTCTTTCTC TCAATTGAAT GCTTTTCATA CAATATATTT TGATTTCATT CCATTTTTGA
  TATTAACTCT CCTTATTAGG TGTGACATAA TCTGAATTTC TCCATCACTG TATAATATGC
  AGATTTTATG AATAGATTTT TTTTTACAGG TTTTTGCTTT ACAAATATTG TGTCTTTACC
  R
  CCACTGTAAA AGTAGAATTG ATTGATCGGA GGCAACATGT GTTTAAAAAT CTTAGTAGGC
  ATTGCCACAC TTCCCTCTTG AACAGAAGTA TAAATAGAAG TAGAGCTGCC TATAACTCTT
  CCTCCACTCA CTCACACACA CCCATACCCA CACACACCCA CACCCACACA CATTTACCTA
  TACACCCACA CATACACACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss63330819	NES17510216	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46343490					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63330819	NES17510216	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103912766 () rs orientation: forward

Symbol	Name	Function Class
Cd59b	CD59b antigen	Intron
Rr562021	regulatory region 562021	454 bp distal
Rr562022	regulatory region 562022	130 bp proximal
Rr562023	regulatory region 562023	1601 bp proximal