rs46343880 SNP Detail

Summary

• ID
  rs46343880
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:86984743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCTACTG GATTGCCTTA
  CCCAGCCTTG ATGTGAGGAT TTGCACCTGG TCTTAATGCA TCTTGCAGTG CCATGTTTGG
  TTAATGTCCG TGGGGGTAGA GACGGGGCTG AGAGTGGATC TGGGGAAGGG TGGAGGAAGG
  GGAAGCTGCA GTCAAATGTA TTGAAAAGAA AAATCCAGGG GCTTGTCCTT CACTAGACAT
  Y
  CCCTAAGAAC GGTACCTTGT TTTAACTATT CTACCAGATA GAAACTAAGG GCAACCTGTT
  GCACAGTTCT GCATTGTAGG CCCTGGCTCA CAGTTATTAG CAGTGCTTAT AGTGCTATCC
  CCAGAATAAG GTGGCTAGGA GTTCTACGTC TCTCAGAGTG ACTCCCTTAT GACATTTGAG
  TGTTAGGTAC TCTATGACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	KK/HlJ
ss62495661	NES17274093	PERLEGEN	MM_PANEL2	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	KK/HlJ
rs46343880					SNP	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62495661	NES17274093	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:86984743 () rs orientation: forward

Symbol	Name	Function Class
Diaph3	diaphanous related formin 3	within coordinates
Gm41224	predicted gene, 41224	187 bp upstream
Rr297552	regulatory region 297552	1457 bp proximal
Tssr4496	transcription start site region 4496	1798 bp downstream
Tssr129931	transcription start site region 129931	1761 bp downstream