rs46344341 SNP Detail

Summary

• ID
  rs46344341
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:27955305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAATCTAA GACAACCCCT
  TTGTTCAACA TTGATGTATT AGTATGTATT TCTTGGATCC TCAAATAGGG TTTACATGCT
  ATAGTTCCAT GTAGAGAAAG TGTGTTGGCT CCCACTAATG TTTGTCAACT GCCTTTTACT
  GTTTCTGCCC GAGTGTGTTT CTGTGTGTTT TGACAGAGTA GGTCATGCTG AGTGTGAGTC
  K
  GCACTGTTTC CATTTCCTAG ACTTGTTCTT CATTGAGGGG AGGACAGGGA ATTGCTGAAG
  GTTGAAAGCA GGAAATAGCA AAACTGTTTA CAGTTAAAAA TGCAGTGTGC CTCTCTGTAT
  ATGTGTGTAT GTGTGTTTAT GTGTTCCTAT GTGTGTATGT GTGTTTATGT GTGTGTATGT
  GTGTATGTTT ATGTGTGTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss52210450	NES15215928	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs46344341					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52210450	NES15215928	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:27955305 () rs orientation: forward

Symbol	Name	Function Class
Ptprk	protein tyrosine phosphatase receptor type K	within coordinates