rs46345515 SNP Detail

Summary

• ID
  rs46345515
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50911001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACGCACA GGGCTGTACT
  TCTCTTCCCT GGCACCGGCC CTCACTCAAT GATGGGGGAA ACTGAGAGGT GAGTTCCTAT
  CCTCTGTGGA ATCTTCTGAC TAGGGACCTG AGGGGACAGG ATGAGCTACC TACCGCCAGT
  CTCCTATATA GGCCTGTCTC CTATAGCACA AAATGGTCAC TCAAAGAGAT CGCCCTTCCC
  Y
  GCTCCCCAGC ACGGGTACTA GGAAGCAGCC TCAGAAGCAG AGGTGGAGGC AGTTACAAAG
  AGCAAGGACA GTCATATTTC CATAACTTGA TGCACATGGT GGAGGATCTG CCAGCCCATG
  GAAATTGCCC TGACGTTTGA AAGGAAAGAT TGGTTGGAGC CCTGCTCCTG TTGGCCCCTG
  GGTAAAGAAA CCCTGCAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133185731	ENSMUSSNP4673643	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46345515					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50911001 () rs orientation: forward

Symbol	Name	Function Class
Gm31686	predicted gene, 31686	864 bp downstream
Gm67430	predicted gene, 67430	within coordinates
Rr543	regulatory region 543	within coordinates
Rr630096	regulatory region 630096	169 bp distal
Rr630097	regulatory region 630097	256 bp proximal
Rr630098	regulatory region 630098	357 bp proximal