rs46346189 SNP Detail

Summary

• ID
  rs46346189
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:111828464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATGG GGGTTCAATC CAGAATGTAC
  T
  AGAGACATGG GAAGTAGAAG ACTCT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147213471	ENSMUSSNP6523060	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss321263718	CHEV_4_111643872	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46346189					SNP	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:111828464 () rs orientation: forward

Symbol	Name	Function Class
Skint7	selection and upkeep of intraepithelial T cells 7	1656 bp upstream
Tssr38394	transcription start site region 38394	1566 bp upstream
Tssr38395	transcription start site region 38395	1655 bp upstream
Tssr38396	transcription start site region 38396	1765 bp upstream