rs46347994 SNP Detail

Summary

• ID
  rs46347994
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:51632945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TCTCTCAGCA ATAGATATAA AAAAAGAATG AACCTTAGCT
  ACACACAACA ATGCGGATGA ATCTATAAAT ATTTGTGCTG AGTGAAATAA ACCAGACAAG
  R
  AAAAAAAAAA AAGGAGAAAA AAAGCTTTCA TTTACATAAA ACCCTAGAAG GAGGACCCTA
  GCAAAGATAA AGAGATTTTT CCCCCTGGGG CATTGTGAAA C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149111925	ENSMUSSNP5099726	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46347994					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:51632945 () rs orientation: forward

Symbol	Name	Function Class
Gm17767	predicted gene, 17767	within coordinates
Rr366896	regulatory region 366896	212 bp upstream
Rr410724	regulatory region 410724	20 bp proximal
Tssr6634	transcription start site region 6634	207 bp upstream
Tssr6635	transcription start site region 6635	384 bp upstream
Tssr6636	transcription start site region 6636	462 bp upstream