rs46349543 SNP Detail

Summary

• ID
  rs46349543
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91053731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCATGTTC ACATCATTTT
  TTTGTAAGCA CCGAGGAGAG TAGAACAGCT GTTATTTAGG TTTCAGTGTT TGTAAACTGT
  ATGTACAACA TTTTTGATGC TGGATTTCAA TGTAATGTTG TGAGTAACCC TTGGACATTT
  TATGTCTTCC TCGTAAGGCA CAGTGCCTTG CTTAGCAATT GTTTTGTCAT GCCTTTTCGT
  R
  TCTTGAAGTG GACACATTTA TTTATTCATG TATTTTTACA AATAACAAAA AATAAAAACG
  TCTGTTAAAA AAAAAATCCC GTGCTTAAGT TTGTTTTATA TATCTCAATA TTTTATTCTT
  CCATCGTATT GAAGGTGTCA GGAATGCTTA AGAAACCATG TTTCCTGCAG CAACAGCTAC
  TAGCTGGAGT CTCCCTTGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61198241	NES16702753	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46349543					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61198241	NES16702753	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91053731 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	within coordinates
Rr614422	regulatory region 614422	1989 bp distal
Tssr47226	transcription start site region 47226	1992 bp downstream
Tssr47227	transcription start site region 47227	1798 bp downstream
Tssr47228	transcription start site region 47228	1735 bp downstream
Tssr47229	transcription start site region 47229	1714 bp downstream
Tssr47230	transcription start site region 47230	1689 bp downstream
Tssr47231	transcription start site region 47231	1659 bp downstream
Tssr47232	transcription start site region 47232	1512 bp downstream
Tssr47233	transcription start site region 47233	1462 bp downstream
Tssr47234	transcription start site region 47234	1427 bp downstream
Tssr47235	transcription start site region 47235	669 bp downstream
Tssr47236	transcription start site region 47236	630 bp downstream
Tssr47237	transcription start site region 47237	610 bp downstream
Tssr47238	transcription start site region 47238	551 bp downstream
Tssr47239	transcription start site region 47239	546 bp downstream
Tssr47240	transcription start site region 47240	527 bp downstream
Tssr47241	transcription start site region 47241	498 bp downstream
Tssr47242	transcription start site region 47242	473 bp downstream
Tssr47243	transcription start site region 47243	455 bp downstream
Tssr47244	transcription start site region 47244	416 bp downstream
Tssr47245	transcription start site region 47245	399 bp downstream
Tssr47246	transcription start site region 47246	345 bp downstream
Tssr47247	transcription start site region 47247	291 bp downstream
Tssr47248	transcription start site region 47248	232 bp downstream
Tssr47249	transcription start site region 47249	171 bp downstream
Tssr47250	transcription start site region 47250	33 bp downstream
Tssr47251	transcription start site region 47251	22 bp upstream
Tssr47252	transcription start site region 47252	74 bp upstream
Tssr51812	transcription start site region 51812	1645 bp upstream
Tssr51813	transcription start site region 51813	1628 bp upstream
Tssr51814	transcription start site region 51814	654 bp upstream
Tssr51815	transcription start site region 51815	608 bp upstream
Tssr51816	transcription start site region 51816	575 bp upstream