rs46349661 SNP Detail

Summary

• ID
  rs46349661
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:24791911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGATCAACG TAACTGACAT
  TTTAAAGTCT GTGACCCCTG ACTCCCAAAT GTATCTGTGA AGAAGAGCTG GTGACTAACA
  GTAAACAGGT TGTGTGTCAC ATCATGTGAC GGGTAATCGA GAAGAAACGG GGTGCTTGCT
  CTCCAGGTCA GGAGGGCCTA CATCCACACT GGCCAAGCGC ACAGCTGCTG CTTCAGTGCC
  K
  CAGACTCTCC CTACCTGTCT TGTAAATTTC TTCTGTGATG TAGAGACCTT CTCTGTAAGA
  TAGGCCTCCC AGAACCGGGG TGCCGGTCGC CGGGGTGAAT GCTGGGTCCA GCCCGTCGAC
  ATCAAAGCTC AGGTGAATCG GCCTTTTCTT CCTGTTAGGA AACAGGAGGG GCTTTCAGCT
  TAAAGTGGTT TAGGAGTCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61262548	NES16880315	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs46349661					SNP	T	T	T	T	G	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61262548	NES16880315	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:24791911 () rs orientation: forward

Symbol	Name	Function Class
Arg1	arginase, liver	Intron
Tssr92746	transcription start site region 92746	376 bp downstream
Tssr92747	transcription start site region 92747	286 bp downstream
Tssr97085	transcription start site region 97085	520 bp upstream
Tssr97086	transcription start site region 97086	458 bp upstream
Tssr97087	transcription start site region 97087	432 bp upstream
Tssr97088	transcription start site region 97088	372 bp upstream
Tssr97089	transcription start site region 97089	357 bp upstream
Tssr97090	transcription start site region 97090	326 bp upstream
Tssr97091	transcription start site region 97091	58 bp downstream
Tssr97092	transcription start site region 97092	78 bp downstream
Tssr97093	transcription start site region 97093	102 bp downstream
Tssr97094	transcription start site region 97094	118 bp downstream
Tssr97095	transcription start site region 97095	132 bp downstream
Tssr97096	transcription start site region 97096	397 bp downstream
Tssr97097	transcription start site region 97097	671 bp downstream
Tssr97098	transcription start site region 97098	819 bp downstream
Tssr97099	transcription start site region 97099	1934 bp downstream
Tssr97100	transcription start site region 97100	1972 bp downstream