rs46350361 SNP Detail

Summary

• ID
  rs46350361
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:22533951 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTA GACCCGCCCA CTAAACCATA
  S
  TTAGGGTCAC GTGGTTCCCC CAAAC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss644396134	FVB_NJ_17_22451937	EVA_MGPV3	EVA_MGPV3	f	SNP	G	C	C	C	G	G	C	C	C	C	C	C	C	G	G	C	G	G	C	G	G	G	C	C	C	C	C	G	C	G	G	G	C	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs46350361					SNP	G	C	C	C	G	G	C	C	C	C	C	C	C	G	G	C	G	G	C	G	G	G	C	C	C	C	C	G	C	G	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss644396134	FVB_NJ_17_22451937	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:22533951 () rs orientation: forward

Symbol	Name	Function Class
Gm7072	predicted gene 7072	133 bp upstream
Gm53992	predicted gene, 53992	within coordinates
Rr523017	regulatory region 523017	144 bp distal
Rr523018	regulatory region 523018	within coordinates
Tssr146602	transcription start site region 146602	161 bp upstream
Tssr146603	transcription start site region 146603	124 bp upstream