rs46350680 SNP Detail

Summary

• ID
  rs46350680
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127482768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTGTTTTT ATATAGTAAT
  AATAATTACA GTTCTTCATG TTGTGGTGAC CCCAACAATA AAACCATGTT CCATAACTGA
  TTTTGCTAGT TATGAATGTT GTGTAATGTC AATATCTGTA TTTTCTGATG GTCTTAGGTG
  ACCCACAGGC TGAGAACCAC TGGGTTAAAA GCATTTGTTG CTCTCACAGA TTTCAGGTCC
  Y
  AGACCTTTGG GTGGCTTATA GTCTTCTGTA ACTCCAGTTC CACGGGCATA TGATATCCAA
  TTCTGGCCTC CATGGGCACC TGCACTCATA CACATAGATT AAAAAGAAAA AAAGAAAAAA
  CAAAAAAGCC CTCCAAATGT CATTGTCTCC TCCAGCTTTA CCTGATCACA CAGATTGGTT
  GTGTCAGTTG TGCTTCTAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135869012	ENSMUSSNP44056	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46350680					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127482768 () rs orientation: forward

Symbol	Name	Function Class
Alpk1	alpha-kinase 1	within coordinates
Tssr35586	transcription start site region 35586	567 bp upstream
Tssr35587	transcription start site region 35587	1629 bp downstream