rs46350741 SNP Detail

Summary

• ID
  rs46350741
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:48812564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATCTAGG AACTGAATTA
  AAAATGTGTA TTAATTGTGT GAAACAAAAG GTCAAGGCAA GACAGAGGGA AACTATTCAA
  ATTATCAAGA CCTCTACTTT TAACACAGTT ATGAATTCTG TAAAATGGAA AGAAAAGTCT
  TAAGTACATT TCAAAAGTGA AAGGTGAATT TTATGGATTG ACCAATAACA ATTTTATGGA
  Y
  TGACCAATAA CGATAGCTAA ATTTTAGAAC TTGATGGTTG GTAAAGGAAA CAGAATAGTC
  ATGTACCTCT TATTAATAGG TATTAATTAA TAGGTATTCT AGATATGTGT CACTGAGTTA
  TTTCACTGTT GCACAAACAT GGTAAAAGAC CACCAATACA CATTTATAAG GCATGGCCTA
  AATATGATAA GAGATTTGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60458511	NES16448033	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46350741					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60458511	NES16448033	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:48812564 () rs orientation: forward

Symbol	Name	Function Class
Cip2a	cell proliferation regulating inhibitor of protein phosphatase 2A	1984 bp upstream
Cpgi8305	CpG island 8305	1294 bp proximal
Dzip3	DAZ interacting protein 3, zinc finger	within coordinates
Rr391755	regulatory region 391755	1138 bp upstream
Rr516660	regulatory region 516660	1714 bp distal
Rr516661	regulatory region 516661	220 bp proximal
Rr516662	regulatory region 516662	1730 bp proximal
Rr516663	regulatory region 516663	1998 bp proximal
Tssr138707	transcription start site region 138707	1996 bp upstream
Tssr141318	transcription start site region 141318	1730 bp downstream
Tssr141319	transcription start site region 141319	1880 bp downstream