rs46351035 SNP Detail

Summary

• ID
  rs46351035
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93641377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGCTAAA GGAAGCCTGC
  CACCAGTTGG CTCTGATTGG GAAATAAAGC TGCCAACGGC CACTGGCTGA GCAGAGACAG
  AGGCAGGACC TTTAGGATTC CCAGACAAGA AATGCAGGAT AGGGAGAAGA AGGGATTTAG
  CCACGAGAGG GGCTTTGGAT GGACCACGCT GTGAAGGAGC AGGAGGGTGA GACAGCCAGC
  Y
  GAAATGTAGG TGCAAAGGGG AAACGGCCCC ATGGGAGAGC TGGCCAGAAG GAAACAGGGC
  AGCAAAGATA AATATAGATT TAGAAAATGT TAACTCTGGA ATGCAGGAGG GGAGTGTGTG
  CTAGCCGCAG GGAGGTTGAG CTAGCTAAGG CATATTAATT ATGAAGGTTT TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss146948895	ENSMUSSNP2237096	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320397093	CHEV_2_93651189	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs46351035					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93641377 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ext2	exostosin glycosyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr561281	regulatory region 561281			782 bp distal
Rr561282	regulatory region 561282			902 bp distal
Rr561283	regulatory region 561283			857 bp distal
Rr561284	regulatory region 561284			1026 bp proximal