rs46351162 SNP Detail

Summary

• ID
  rs46351162
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:131709043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCAAGTTG GGCATGATGG
  CACAGGCCTG TAAACCTAGT ACCTGGGAGG CGGATGATAG CAAGTTATAG GTAGGACAGG
  GCTACATAGT AAGGCTCTGT CTGAAAACAT AAACAAACAA ACAAACAAAT TCAACTCTCT
  TTTTTCTCTC TTTGTAGCCT AGGCTTGCCT TAAACAATCC GCTCGCCTCC AGAGAACTGG
  Y
  ATTACAGGTG TAATCTGCCA CACCCAGCTC CCTCACTGTT CTTCTCCCAT AGTCCTTTGC
  TTCTTCCCTT TCTTTCTCCT CTCTTTTTTT CCCTTTGCCC CCATGGAGGG AGTCTTGCTA
  TGTAGCCCAG GCTAGCTTTA GGTTTTTAGA TTTATGTCTA TGGGTGTTTT GGCTGATGTA
  TGTCTGTGTA CCACATGCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss147472323	ENSMUSSNP2185853	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T		C
ss321329607	CHEV_4_131537647	CHEVERUD	SCREENING_POP	f	SNP				T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs46351162					SNP	T	T	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131709043 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Epb41	erythrocyte membrane protein band 4.1			Intron
				Noncoding-Transcript-Variant
Rr600833	regulatory region 600833			213 bp proximal
Rr600834	regulatory region 600834			366 bp proximal
Rr600835	regulatory region 600835			1032 bp proximal
Tssr43622	transcription start site region 43622			994 bp downstream