rs46351556 SNP Detail

Summary

• ID
  rs46351556
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:41582626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAGTATTTG TATGGATTTT TAACCTTTTA AAATTAGAGG
  GAAAGTCAGG TGTGGTGCTT TTAATCTCAA CATTTAGGAT GGAGAGGCAG GCTAGGCAGA
  W
  TTCTGTGAAT TCCAGGTCAG CCTAGATGAC ATAGTGAGTT CCAGGGAGCT CAGGTTACAT
  AGAGAGACCC TGTCTCAAAA CAAAGACAAA ACCCAACAA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135042585	ENSMUSSNP5129633	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	T
ss320728942	CHEV_3_41432113	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46351556					SNP	T	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41582626 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm66500	predicted gene, 66500			within coordinates
Sclt1	sodium channel and clathrin linker 1			Intron
				Noncoding-Transcript-Variant