rs46352159 SNP Detail

Summary

• ID
  rs46352159
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:58625560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGC TCCGCCTAAA GATTCCGTCC
  Y
  GGAGCAAGAC AAACACGGCT TTATC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149138758	ENSMUSSNP4866424	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46352159					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58625560 () rs orientation: forward

Symbol	Name	Function Class
Cpgi281	CpG island 281	within coordinates
Hycc2	hyccin PI4KA lipid kinase complex subunit 2	78 bp upstream
Ndufb3	NADH:ubiquinone oxidoreductase subunit B3	mRNA-UTR
Rr411456	regulatory region 411456	1938 bp distal
Rr411457	regulatory region 411457	221 bp distal
Rr411458	regulatory region 411458	7 bp distal
Rr411459	regulatory region 411459	182 bp distal
Rr411460	regulatory region 411460	within coordinates
Tssr93	transcription start site region 93	227 bp upstream
Tssr6781	transcription start site region 6781	within coordinates
Tssr6782	transcription start site region 6782	4 bp upstream
Tssr6783	transcription start site region 6783	190 bp upstream
Tssr11786	transcription start site region 11786	83 bp upstream