rs46353489 SNP Detail

Summary

• ID
  rs46353489
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:114341064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CACAAACATG CACGCGTGTG CACACACACA CTCCCACACA
  CCCACCCTTC TTTACCAGAT ACAAAGATGA GACACCCGAA AATATGAATG GTCTGCTTTT
  C
  TAGGCTAGCA AGCCACAGCC ATATCTCCTA GGGATGAGAT GTCAGACACA CTGAGGTAAA
  CAGAGAAAAG CCCTGTTGCA TCGATAAAAA AGAAAAGAGC A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss136994924	ENSMUSSNP1249964	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs46353489					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:114341064 () rs orientation: forward

Symbol	Name	Function Class
Rr198888	regulatory region 198888	1464 bp distal
Rr207540	regulatory region 207540	465 bp distal
Rr207541	regulatory region 207541	937 bp proximal
Rr368881	regulatory region 368881	1835 bp downstream
Trim71	tripartite motif-containing 71	within coordinates
Tssr91842	transcription start site region 91842	443 bp downstream