rs46353516 SNP Detail

Summary

• ID
  rs46353516
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:21425388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAGG ATAAAATAAC TCCACCTGGG
  T
  GAGATGAAGA GCCAGAGGAA CATCT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss137298244	ENSMUSSNP1225150	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss323931441	CHEV_12_21381248	CHEVERUD	SCREENING_POP	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs46353516					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:21425388 () rs orientation: forward

Symbol	Name	Function Class
Adam17	a disintegrin and metallopeptidase domain 17	1755 bp upstream
Cpgi4477	CpG island 4477	1180 bp distal
Gm49586	predicted gene, 49586	1041 bp downstream
Rr463712	regulatory region 463712	1948 bp distal
Rr463713	regulatory region 463713	1704 bp distal
Rr463714	regulatory region 463714	1823 bp distal
Rr463715	regulatory region 463715	663 bp distal
Rr463716	regulatory region 463716	1643 bp distal
Rr463717	regulatory region 463717	1155 bp distal
Tssr112932	transcription start site region 112932	1608 bp downstream
Tssr112933	transcription start site region 112933	1130 bp downstream
Tssr115856	transcription start site region 115856	1895 bp upstream
Tssr115857	transcription start site region 115857	1869 bp upstream
Tssr115858	transcription start site region 115858	1841 bp upstream
Tssr115859	transcription start site region 115859	1795 bp upstream
Tssr115860	transcription start site region 115860	1770 bp upstream