rs46353555 SNP Detail

Summary

• ID
  rs46353555
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:73414914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCCTGGAG GAGAAACTCC
  TGGTGGTGGG CACCCAGGAT GGTGCCATGG TCGTGTGGGA CGTGGAGGAA CAACAGGTGG
  TACACGTTCT AATGGGACAC ACAGGTGACT AGTGACACAC AGGGTGGCTG TACTCTGTCC
  CCAGGGCCCC TTCTCCCTCA CACACCAACA TCCCTGCACC GAAACTCTTG GGCTTGCTCT
  R
  CATTGGTCAG AACTATATAA CAATTCACCT CACACACAGT GACTGCAAAC AAAATTTTTA
  TTTTTAAAAA ATTGAGAGTC AGGGGCTGGA AAGATTGGCT CAGGGCTTAG TGTGCAGCTT
  CAGTCCCAGC ACCCATGTTG GGTGGCTCAC ACTGCCTGTA ACCCCAGCTC CAGGATATCC
  TATGCCTTCT TCTGGCCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60635577	NES16027844	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46353555					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60635577	NES16027844	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:73414914 () rs orientation: forward

Symbol	Name	Function Class
Nwd1	NACHT and WD repeat domain containing 1	within coordinates
Tssr78010	transcription start site region 78010	1078 bp downstream
Tssr78011	transcription start site region 78011	100 bp upstream
Tssr78012	transcription start site region 78012	140 bp upstream
Tssr78013	transcription start site region 78013	169 bp upstream
Tssr78014	transcription start site region 78014	193 bp upstream