rs46355449 SNP Detail

Summary

• ID
  rs46355449
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127430913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGC ATGCTAGGCA CATGCTCTAC
  M
  ACTGAGCTGC ACGCTCGAGT GTTAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147535357	ENSMUSSNP3157485	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46355449					SNP	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127430913 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12227	CpG island 12227	969 bp distal
Mrps5	mitochondrial ribosomal protein S5	Intron
Rr564563	regulatory region 564563	1910 bp distal
Rr564564	regulatory region 564564	1761 bp distal
Rr564565	regulatory region 564565	883 bp distal
Rr564566	regulatory region 564566	1412 bp distal
Rr564567	regulatory region 564567	400 bp distal
Rr564568	regulatory region 564568	1081 bp proximal
Tssr20024	transcription start site region 20024	1730 bp downstream
Tssr20025	transcription start site region 20025	1714 bp downstream
Tssr20026	transcription start site region 20026	1563 bp downstream
Tssr20027	transcription start site region 20027	1328 bp upstream
Tssr20028	transcription start site region 20028	1749 bp upstream
Zfp661	zinc finger protein 661	1899 bp upstream